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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctatgatctgaatgaacatgattcttggagtcatggtcgtattctgattatctattttgtttctaagtag

Basic information

species Glycine max
transcript GLYMA06G11120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g21910.1 (Oryza sativa), 5'ss of exon 4
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttaga-taatccactgatctatgatctgaatgaacatgattcttggagtcatggtcgtattc-tgattatctattttgtttctaagtag-------------
|| ||||||||||||||||| || ||| |||| ||||||||||| || ||||| || || ||||| |||||||| |||||||| ||||| ||||| |||  ||      |  |  || | |   |  |  || |   | | | |||  | |||| |   |||    ||  | |   ||  |||             
GTACATAATGATGATGAGGTGAGAGCACTGTTTAAGCAAGTTCAGGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAGGTGGCATCTCAGgtgagaacaacttggagcacattgcttttcctttatttgttctgttgtg-cat--ttgtatccaccatttaacatgctatccatatatagatgcctgttaagg

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 8
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactga-------tctatgatctgaatgaacatgattcttggagtc---atggtcgtattctgattatctattttgtttctaagtag--
|||||||||||||||||||| ||| |||| || |||||||||||||| ||||| || ||||| || |||||||| |||| | | ||  | |||||  |    |  |  ||        || |   || ||||   |    |   |||||    |||||  | |||||  | | |  | |||   | | |    
GTTCATAATGATGATGAGGTTAGGACATTATTTAAGCAAGTTCAAGGCGAAGTACCTGGTTCCCCAATATTTATCATGAGGCTAGCTGCTCAGgtggggccttttatggaagttacaccttttcccttaatgttgagttattccggagttattatggttatgttctgtatgtttgatctgtaaattattgaaa

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G377341_T02 (Zea mays), 5'ss of exon 4
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttaga--taatccactgatctatgatctgaatgaacatgatt-cttggagtcatggtcgtattctgattatctattttgt------ttctaagtag---------------------------------------------
|||||||| ||||||||||| |||||  ||||||||||||||||||| ||||| || || ||||| |||||||| ||||| || ||||| ||||| |||  | || ||  ||| | |   |    |   ||||    ||| ||| | ||    ||   |  || | | | |  |      |||   |||                                              
GTTCATAACGATGATGAGGTGAGGGCGCTGTTCAAGCAAGTTCAAGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAAGTGGCATCTCAGgtgagaactgattcaaagat-tgtttcccttgttttcatgtcggctttgagcc-tgactctacctttgttctttgtatcatgagcgcttcggtgtaatatatatttgttcctgaaagcattcattctgttctttctttgtag

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccact----------gatctatgatctgaatgaacatgat-tcttggagtcatggtcgtattct---gattatctattttgtttctaagtag
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||||| |||| | |||||||||||||||| |  |   ||           || ||| |||          || | | ||  ||| ||  | ||||| |   ||  ||||  |  | |  | |    
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTATCATGAGGCTTGCATCCCAGgttagttttttttctttctttctggaatttataatccatccctttttgttcttttaaagttatccttgtattttctggaacatctgatacgctattgaaa--

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccact---gatctatgatctgaatg----aacatgattcttggagtcatggtcgtattct---gattatctattttgtttctaagtag--
|||||||||||||||||||| || ||  |||| |||||||| ||||||||||| || || || || |||||| | |||| | |||||||||||||||| |  |    |     |||   || |  ||     | | |    | |  ||| |   | ||||| |   ||   |  || |  |   | | |    
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgttagtttttttttttcctttctgaaatttatattccataccttttcacctttagttacccttgtattttctggaagcttcatctgatgcattattgaca

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgt-tagataatccactg-atctat-gatctgaatgaacatgattcttggagtcatggtcgtattctgattatctattttgtttctaagtag-------------------------------------------
|||||||||||||||||||| |||||  | |||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| || ||||| | | |  |  |||  |||| | ||||  |    |  ||| |  |    |  |     || |  ||  || ||   |  |  |   | |                                           
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttacta-gagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgt--tagataatccactg-atctat-gatctgaatgaacatgattcttggagtcatg-gtcgtattctgattatctattttgtttctaagtag
|||||||||||||||||||| |||||  | |||||||||||||||||||| || ||||| || || |||||||||||||||||||| || |||||  | | || |  |||  |||| | ||||| |||  |  |||||     ||| ||  || | ||  |  |||| |||| |||          
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAAGGTGAGGTCCCGGGCTCGCCGATATTTATAATGAAGGTTGCTTCACAGgtaatggctacttaactatatcttttgatctcaatataactgattaacttagtaatacgtgggatgttctttatatattgtgtag--------

upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataatccactgatctatgatctgaatg---aacat-----------gattcttggagtcatggtcgtattctgattatctattttgtttct---aagtag
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| || || |||||||| |  ||||||||||| |||||||| | || ||| ||||  || |||| ||||||   | | |             ||  ||||||     || ||||||||  ||   ||| ||||||   || |||
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatctactgcgctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305788|gb|FG995730.1|FG995730
EST:     AAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAG                         AGCCGACATCTAGAAGTCCAGTTACTTTGTGATCAGTACGGAAATGTCGCA
genomic: AAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgttagataat ... ttctaagtagAGCCGACATCTAGAAGTCCAGTTACTTTGTGATCAGTACGGAAATGTCGCA