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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTTCCTACATGTATGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgagtaaattctcttttgttgtatgttattgcattatctttttatctggattatataacctgtgatttgtattaggatttaggaaagaaagctgg...

Basic information

species Glycine max
transcript GLYMA06G09320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09320.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 5
CACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTTCCTACATGTATGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgagtaaattctcttttgttgtatgt-tattgcat-tatctttttatctggattatataacctgtgatttgtattaggatttaggaaagaaagctgg
||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||  | |   ||||||||||||| |  |  || ||||| ||  | |  ||| | |  | |   |      ||   | ||  | ||  |     | || |    |       |||  | ||   |||    | | | |  |    |  
CACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGgcaagtcattgcactgcatcacaaagtccatatacagtatgcaggcgatcatatttccttctagttctgaaaattactttattcctgaagtatcattcat--

upper sequence: GLYMA06G09320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g00520.t01 (Vitis vinifera), 5'ss of exon 5
CACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTTCCTACATGTATGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgagtaaattctcttttgttgtatgttattgcattatctttttatctggattata---taacctgtgatttgtattaggatttaggaaagaaagctgg
 || |||||||| || |||||||| |||||||| ||||| ||||||||||| ||||| |||||| |||||||||| || |  |   ||||||| |||||||||||||| ||   |  | |   || |     |  || |  |||||  |  | | |   |   ||   | ||||    || ||| ||   |  | ||      
AACATGTGGTGGTCTGTGCCCTGGGCTCAACACAGTCATCAGGGAAATTGTGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATgtgagtgattattctgacataactt-tccaagaacgcctattctttagaggttgttgtcagcttacattttgatcaaaatcagggttgtagttacaatttc--