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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATGGAGGTTATCAAGCTTGAAAACATGGGCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaattattttacaatagcattttcttcaacatatttatttccaggtgctcaaccctattgccaactaatcaaccatggtttccactctatgcaaa...

Basic information

species Glycine max
transcript GLYMA06G09100.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541805|gb|BU091648.1|BU091648
EST:     GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAA                         CTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
genomic: GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaatt ... ctgtccacagCTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
EST: gi|151395024|gb|EV264895.1|EV264895
EST:     GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAA                         CTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
genomic: GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaatt ... ctgtccacagCTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
EST: gi|15286780|gb|BI470671.1|BI470671
EST:     GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAA                         CTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
genomic: GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaatt ... ctgtccacagCTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
EST: gi|9819663|gb|BE555176.1|BE555176
EST:     GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAA                         CTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
genomic: GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaatt ... ctgtccacagCTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
EST: gi|4396314|gb|AI495311.1|AI495311
EST:     GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAA                         CTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT
genomic: GCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAAgtaagtaatt ... ctgtccacagCTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTT