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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctttcctccatgcccaatgtgcttgtcatttagattcaatagaatattttttttaacatatttgctattttatgtctacag

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 4
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctttcct--ccatgcccaatgtgcttgtcatttagattcaatagaatattttttttaacatatttgctattttatgtctacag
|| |  | |||||||||||| | ||||||||| | || ||||||||||| ||  ||||  | ||||  ||||||||||| ||||||||||| || |||||||||||  | ||     ||||||   |||  || | ||||   || |   |        |  | |||   ||     | | ||| | |||
TGCTTCTCTCACTTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtcttatctaaatcatgccttttgt-ttttttatttg--tttatctgtggtcaagtcatgacacggtta----tgtgtgtttgcag

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 4
TGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctttcctccatgcccaatgtgcttgtcatttagattcaatagaatatttt--------ttttaacatatttgctattttatgtctacag-----------------------
|| | || ||||| ||| | |||||||||||| |||| || |||||||| ||  ||||| ||||| ||||||||||||| ||||||||  | || ||||||||||||||||||   |||    |||    | |  || | |||  ||| |||  |||        ||| |     |||| |   |||| || |||                        
TGCTGTTATCACTATTCCTTCTCTTCAAGTTTCTATCAAAAGACTTGGTTAATGCTGTACTGACATGCTACTTCTTTGTGCTTGGGATCATCGCTCTTTCgtatgttctttccgt-atggatcatgctactatgcttaatatttgatataattatttagaaatagtttcatgtggtttggttcattatctc-acattatctttcttctattttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
EST: gi|213600256|gb|DB964336.1|DB964336
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGA
EST: gi|193440389|gb|FK410484.1|FK410484
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTACTGCCAAAGCATTGGAACG
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTT-CTGCCAAAGCATTGGAACG