Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaagaactcaagactttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaaagatgtccttgtacatattt...
Basic information
species | Glycine max |
transcript | GLYMA06G06890.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G06890.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 5'ss of exon 4
GGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaagaactcaagactttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaaagatgtccttgtacatattt----
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AGAGATCCTTCGCAAGCGGAGAGCTGGTAAACTTCCTGGTGATACTGCATCTATACTAAAAGCTTGGTGGCAAGCTCATTCTAAGTGGCCATACCCAACTgta------cgtggcaccaacattccatttccgtaactttattatta------tggtatcaatt--gtgggtcatgacgagcaattctttctacacatattcag
upper sequence: GLYMA06G06890.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 4
GGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaag-aactcaagactttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaaagatgtccttgtacatattt
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AGAGATTATGCGCAAGCGCAGAGCTGGGAAACTTCCTGGAGATACTGCATCTGTGCTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCATACCCAACTgtatgtgacactacggcgacatataattccctcgtcaa-cttttgctatcagcttgggttca--ttgctgatccactctttgcttattcatccag------
upper sequence: GLYMA06G06890.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G433591_T02 (Zea mays), 5'ss of exon 5
GGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaagaactcaagactttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaaagatgtccttgtacatattt
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AGAGATCATGCGCAAACGCAGGGCTGGGAAGCTTCCTGGAGATACCGCATCTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgacaccgcgtcaacttaattccctcgttagcttctgct--atcaggttcggctca--ttgatgagcaactctttgcttactcgtccag------
upper sequence: GLYMA06G06890.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S154_83V6.1 (Physcomitrella patens), 5'ss of exon 8
GGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgta----agaactcaaga------ctttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaa-agatgtccttgtacatattt---------------------------------------------
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GGAGATCCTACGCAAACGGCGTGCTGGAAAGCTGCCTGAGGGAACTACAACAGTCTTGAAGGCTTGGTGGCAAGCACATTCAAAGTGGCCATATCCCACGgtatcaaaaaattcatcaggaatcctgaactacgtatatccattca-tgctttatgttctagttcacgtaatttca--gaattccatttatatatatatatatacgtattggtgacatgctgatttttccacctctgttttgcactcctcaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298195893|gb|HO044284.1|HO044284EST: CTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACG GAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAG
genomic: CTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaagaactc ... gttttttcagGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGgtaagaactcaagactttactatgtttttttaggaaatccctttcaaacaaatttgaacgaatttaatgaataacaacaaagatgtccttgtacatattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG