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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtacttactatcactatttcgtattttatcactttagagtcttaattgcattggcatttctcatacttgtggtggctatgtaaaccaaggttgtttgtatgtcttgtgtttaaacag

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 3
CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtacttactatcactatttcgtattttatcactttagagtcttaattgcattggcatttctcatacttgtggtggctatgtaaaccaaggttgtttgtatgtcttgtgtttaaacag
 ||||| || |||||||||||||| || ||||| ||||||||||||||    || ||  |  |  ||||| ||||   |  |   | | || |||  |||  | |   ||   ||| | | |    ||   | |  |  |  ||    ||  |   | ||  |                              
TAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGTgtactgatctttaagctctctttgttatcattt---ttatcagtgtgagtcat-ttaagagtaattgttattactatgttttgtttaattag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208198399|gb|GD997590.1|GD997590
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
EST: gi|208229472|gb|GE022876.1|GE022876
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCNGATACCTGACG
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACG
EST: gi|208332397|gb|GE128662.1|GE128662
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
EST: gi|193661296|gb|FK607472.1|FK607472
EST:     GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT                         TGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA
genomic: GAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATgtatgtactt ... gtttaaacagTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGA