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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGgtcagatatttcttttctgcacttttagttacttcaatcccaatgacttgtcgtatttcttgtctagaaatatagacagtagaagaggttgttactgtgt...

Basic information

species Glycine max
transcript GLYMA06G04620.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286843|gb|BI470734.1|BI470734
EST:     GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCT
genomic: GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCT
EST: gi|151394530|gb|EV264401.1|EV264401
EST:     GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
EST: gi|9901942|gb|BE610910.1|BE610910
EST:     GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
EST: gi|192295596|gb|FG988170.1|FG988170
EST:     GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACG                         TTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG
genomic: GAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGgtcagatatt ... tgaaatgcagTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAG