1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccctatgtgtttttaatttaattatgttaaaaaacaacacatctgttggagaaaacaatattatggctatagtaaaaaatatatgtgtgcaac...
species | Glycine max |
transcript | GLYMA06G03970.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG GAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATEST: gi|37996722|gb|CF808311.1|CF808311
genomic: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccc ... catgtttcagGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTAT
EST: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG GAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATEST: gi|37996920|gb|CF808509.1|CF808509
genomic: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccc ... catgtttcagGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTAT
EST: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG GAAATCAGAATTCTCCGTCAGTTACTCCACCCCAACATTGTGCAGTATTATEST: gi|8284069|gb|BE021628.1|BE021628
genomic: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccc ... catgtttcagGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTAT
EST: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG GAAATCAGAATT
genomic: TGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccc ... catgtttcagGAAATCAGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAGgttcttcccctatgtgtttttaatttaattatgttaaaaaacaacacatctgttggagaaaacaatattatggctatagtaaaaaatatatgtgtgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaaa