1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGgtactttacataatatttctgtcattattttcttacagccatctaatcaaatggtacagatggggtggttagtgcagagatcataggttgaatttaaaaa...
species | Glycine max |
transcript | GLYMA06G03360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTT-AAAGGATTTCAG GTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCACEST: gi|208114928|gb|GD911657.1|GD911657
genomic: GGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGgtactttaca ... cattttgcagGTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCAC
EST: GGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAG GTGAACCAAAATCCTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCACEST: gi|21889784|gb|BQ742997.1|BQ742997
genomic: GGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGgtactttaca ... cattttgcagGTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCAC
EST: GGTAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAG GTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCAC
genomic: GGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGgtactttaca ... cattttgcagGTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGgtactttacataatatttctgtcattattttcttacagccatctaatcaaatggtacagatggggtggttagtgcagagatcataggttgaatttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgg