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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttaccctttcactgctctttctagtctctgacttctattagtgttaatctatgttttagatttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcag

Basic information

species Glycine max
transcript GLYMA06G03230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttaccctttcact-gctctttctagtctctgacttctattagtgttaatctatgttttagat-ttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcag
 ||||| ||||| ||||| ||| | ||| | ||||| |||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |  |||| | | | |  || |  | | ||   | | |  |  ||      ||  ||||   |  |||| |   |   |||| ||   |  ||  | |||  ||| |  ||   | ||  |||    | |  ||||| |                                        
GGGTGGGTTATCAGATCAAATCCGAGAACTCAGGGAATCAATTGAGCTACCTCTAATGAATCCTGAACTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGgtgattcatactttaatttgttagttattctgtatggtctgt-tctgcattgtcaattgagttagccatcctagtggtggtaacatga-atggattttatttttttccttaattaaaaagt-ctcttaaattttatttttttgcag---------------------------------------

upper sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S91_182V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtga--tttacc--ctttcactgctctt--tctagtctctga---cttctattagtgttaatctatgttttagatttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcag
||| ||  |   |||||| ||| | ||  |  | |||||||||||  | || || |||||||| |||||||| || |||||||| ||||| ||||||||||||   ||||||  || |||||  | |      ||| |  |    | |||| |  | || |  |   ||   |     | ||| ||     ||   |  |                                                                                            
TGGAGGACTCAGTGATCAAATCCGAGAGCTCCGTGAGTCAATTGAGTTGCCGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgttttaccatctgtcactaatttagactcagtttacgtagtcatctactcctattgacatgcattcctggcgactggtacctccacgatattacat--------------------------------------------------------------------------------------------

upper sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S47_46V6.2 (Physcomitrella patens), 5'ss of exon 4
TGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttaccctttcactgctctttctagtctctgacttctattagtgttaatctatgttttagatttttagtagctttgttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcag
||| ||  ||  ||| || ||  | ||| |  | ||||| |||||  | ||  | ||||||||||| |||||||| |||||||| |||||||||||||||||          |||||||    ||    ||  | |  |   || |  ||  |||    ||||  | |||| ||  || |    ||  ||   | |    ||| ||| | |                                                                        
TGGAGGACTAAGTGACCAAATTCGAGAACTTCGTGAGTCGATTGAGTTGCCGTTAATGAATCCTGAACTCTTTCTGCGAGTTGGCATTAAACCTCCAAAGgta---------ttcactgacacttactttcgatcagcttccttggccttggtctccagtttac-tgtttatta--ttcgactcgaagttacccttcgtgattatttgaata-----------------------------------------------------------------------

upper sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S13_419V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGTGGCTTATCTGATCAGATCAGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttaccctttcactgctctttctagtctctgacttctatt-agtgttaatctatgttttagatttttagtagcttt--gttatgacatttttcctacatatttttttagtggaagcttacttgtaatggctgtacttttgaattttacacttgatcaaaatcttttcaattctaattttcag
||| ||  ||  ||| || ||  | ||| |  | |||||||||||  | || || ||||| ||||||||||| ||||||||||| ||||| ||||||||||| |  ||         || | |      || |||| ||  ||| ||       |  ||   |  || ||| ||  | ||  ||  |  | || || | |                                                                                      
TGGAGGACTAAGTGACCAAATTCGAGAACTTCGTGAGTCAATTGAGTTGCCGCTTATGAACCCTGAGCTCTTCCTTCGAGTTGGCATTAAGCCTCCAAAGgt-acctattggcctg-tgttttactacctcgctgattttgatttagcaactgccagtgacatgcatcttttgtgacgttacgtcctacccttatttccatg------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644366|gb|FK594171.1|FK594171
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|193358198|gb|FK322766.1|FK322766
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|151393977|gb|EV263848.1|EV263848
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTTCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|298164161|gb|HO013806.1|HO013806
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|254346175|gb|GR859788.1|GR859788
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGG
EST: gi|208163154|gb|GD965706.1|GD965706
EST:     CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAG                         GGTGTTCTCCTTTACGG
genomic: CTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGgtgatttacc ... taattttcagGGTGTTCTCCTTTACGG