Sequence
atgc intronic sequence ATGC exonic sequenceTATTACTATGAGGTTGGAATAGGGAATACCACTCGACAATTCTGGTTCAAAACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaacacttcctcctctattatatgtgtctatgcgtaaataacttgacttgttgtagatgtgaaatctatttacttgattgtgtatgtatagctaa...
Basic information
species | Glycine max |
transcript | GLYMA06G03100.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 3
TATTACTATGAGGTTGGAATAGGGAATACCACTCGACAATTCTGGTTCAAAACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaacacttcctcctctattatatgtg-tctatgcgtaaataacttgacttgttgtagatgtgaaatctatttacttgattgtgtatgtatagctaa
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TACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGgtagtattcaatattcctaaattcatttttgctatgtcaggatacacattcaccaaatctataaacgatctatatc-actgaaaacaacatctgtattcag
upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 3
TATTACTATGAGGTTGGAATAGGGAATACCACTCGACAATTCTGGTTCAAAACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaacacttcctcctctattatatgtgtctatgcgtaaataacttgacttgttgtagatgtgaaatctatttacttgattgtgtatgtatagctaa-----
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TATTACTATGAGGTTGGGATTGGGAATACTACACGACAGTTCTGGTTTGTAACTCCTCCCAGAGCTGGCCCTGATGTTCCTTATACTTTTGGTCTCATAGgtactt--ttctttttcatcaatttgttctgcctgtatat---ttgatcattgtagtctagagttaaatttcggttcctaaaaaaaaataatttaaccaggaaag
upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 3
TATTACTATGAGGTTGGAATAGGGAATACCACTCGACAATTCTGGTTCAAAACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaacacttcctcctctattatatgtgtctatgcgtaaataacttgacttgttgtagatgtgaaatctatttacttgattgtgtatgtatagctaa-----
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TATTACTATGAGGTTGGAATTGGGAATTCTACACGACAATTCTGGTTTGTAACTCCTCCCAGAGCTGGCCCTGATGTTCCCTACACTTTTGGTCTCATAGgtattt---tttttttcccataaatttgttgtatatgtatatttgatatga-tcattgtagtttgtgactgtattttgctt-tcaaataaaggtagttcatggttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9204908|gb|BE331132.1|BE331132EST: AACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTG GGGATCTATGCCAAACTTACAATTCCAACAGGACGCTTACCCATTATGAAC
genomic: AACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaaca ... tatggagcagGGGATCTAGGCCAAACTTACAATTCCAACAGGACGCTTACCCATTATGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTACTATGAGGTTGGAATAGGGAATACCACTCGACAATTCTGGTTCAAAACTCCTCCCCCTGTTGGCCCCGATGTTCCCTATACATTTGGTCTCATTGgtaattaacacttcctcctctattatatgtgtctatgcgtaaataacttgacttgttgtagatgtgaaatctatttacttgattgtgtatgtatagctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC