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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgtcagttacaatagttgcacagattgcctgagcggtgtctgcacttttgctattgtaatttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag

Basic information

species Glycine max
transcript GLYMA06G02110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g44015.1 (Oryza sativa), 5'ss of exon 5
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgtcagttacaatagttgcacagattgcctgagcggtgtctgcacttttgctattgtaatttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag
|| |  ||||||||||||||||| || || || ||||| || ||||| ||||| ||||||||||||  |||||||||||||||  | |||| | ||  | ||               |||||| |  || | ||  |  |  |     |     || || |  ||  |||   |  | |     |||| |  | | |||||
ATAATTGATGCTGTTGTTGCTGCACGTATCTTAAATGCCACACTTGTTGTTCCCAAATTGGATCAAACATCTTTCTGGAAAGATGCAAGgttaatttgagta--------------ttgagcgcttcctaccctaatatt-ctaaggctgcccatgtttctatgaacacttacatttgtatgtgtactgt-ttctctgcag

upper sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgt-cagttacaatagttgcacagattgcctgagcggtgtctgcacttttgctattgta-atttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag
||    ||||||||||| ||||| || ||||| ||||| || ||||| |||||  ||||||||||| |||||||||||||||| || ||||  |    ||       |    |     | |    ||        | ||  |||| | |||| || ||   | | || ||   |    |||  |    || ||||    ||||
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttg---aactgattaacttcttttctgaatgctctctgct----gcag

upper sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G168614_T02 (Zea mays), 5'ss of exon 5
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgtcagttacaatagttgcacagattgcctgagcggtgtctgcacttttgctattgtaatttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag
||    |||||||| |||||||| || || ||||||||||| ||||| ||||| ||| ||||||||  ||||||||||||||| || ||||  |  | | |       |||     |  |      ||   | | ||  |||  |  ||  ||||| | ||     |    |  | |||||  || |  ||||||      
ATAGTTGATGCTGTAGTTGCTGCACGTATATTGAATGCTACACTTGTTGTTCCCAAACTGGATCAAACATCTTTCTGGAAAGATTCAAGgtatgcgatagtcaccagtcagcacttcccaattcaatcgataatctt-ttatcat--ttataggtgttcat----atttaatttactcttg-tattcaatgctttag----

upper sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G131699_T01 (Zea mays), 5'ss of exon 5
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgtcagttacaatagttgcacagat---tgcctgagcggtgtctgcacttttgctattgtaatttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag
|| |  ||||||||||||||||| || ||||| ||||| || ||||| ||||| ||| | || |||  ||| ||||||||||| || |||| | ||   |  |     ||  |   |||| ||    | |  |   |  || | || |||  |||  |   |      |   |||     ||| | |||  ||  ||   ||||
ATAATCGATGCTGTTGTTGCTGCACGCATTTTAAATGCCACACTTGTTGTTCCCAAACTAGACCAAGCATCCTTCTGGAAAGATTCAAGgttaatttggagcgcaaatcacttctatgccagaatcttctaaggcttcctgtttttctaagatgactttaatgcatttgggttgta----cttaatataactt--ttcccgcag

upper sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g00100.t01 (Vitis vinifera), 5'ss of exon 5
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgtcagttacaatagttgcacagattgcctgagcggtgtctgcacttt------tgctattg-----taat-ttgaggtggttatcagagta-----ctgtgaaatc--ttgaca-------tactttgctttttgcag
|| || ||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||||||    || || ||||  ||  |||||| ||| |    |   ||| |      |||     | | |||| |||      || | |||     || | || |  |  | |  |||| |     |||||| |||  || |||       |||| ||  || |||||
ATAACTGATGCTGTTGTCGCTGCCCGCATTTTAAATGCTACTCTTGTCGTTCCAAAACTGGATCAGAAGTCCTTTTGGAGGGATGCTAGgttagtcattgaatgagcatatgcgttctgctacctttttgcaatttatattttgttgttggttcttagtattcaaatcttaaaaagagcatcttgctgtgatatcagttaacaaatttgttactctgtcttctgcag