1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGgtttcattttcttatgcaacttttattttattttatattcttgtgtatggtctgtgatctgtgttactaacttggattataaatattctatctctttaatttttaaatag
species | Glycine max |
transcript | GLYMA06G01520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAG GTTATCATCGTCACAAGCTCTCTCATGAAGGACATGAACAGCAAGATEST: gi|208263070|gb|GE062490.1|GE062490
genomic: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGgtttcatttt ... ttttaaatagGTTATCATCGTCACAAGCTCTCTCATGAAGGACATGAACAGCAAGAT
EST: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAG GTTATCATCGTCACAAGCTCTCTCATAGAAGGACATGAAEST: gi|208331563|gb|GE127348.1|GE127348
genomic: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGgtttcatttt ... ttttaaatagGTTATCATCGTCACAAGCTCTCTCAT-GAAGGACATGAA
EST: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAG GTTATCATCGTCACAAGCTCTCTCATGAAGGACATGAACAGCAAGAT
genomic: GGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGgtttcatttt ... ttttaaatagGTTATCATCGTCACAAGCTCTCTCATGAAGGACATGAACAGCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCTGACGAGgtttcattttcttatgcaacttttattttattttatattcttgtgtatggtctgtgatctgtgttactaacttggattataaatattctatctctttaatttttaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC