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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtag

Basic information

species Glycine max
transcript GLYMA06G00690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g05690.1 (Oryza sativa), 5'ss of exon 2
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtag
||| || |||||||||||| | || |||||||| || ||||||||||||||||| ||||| || |||||| || | || ||||| ||| | ||||| ||||||   | |  |   |  |   | | |    |    ||||  | | |    |  |||    || ||  ||  |||  || ||  | | | |||  | ||| |                               
CCCGTCATTCCACAACTACCGCATTTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCCTGGTACATCGCCGTCGCCTCCCTCATCCACGGACAGgtacatatatatcttacataatattcatagcagttttata-gttcttgaggaggtatcatgatgtaccaaaaatttaatataaaatttggtacc-tcatagt-------------------------------

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataa-atgca-tatatatacatatat-atatatatatatatatgaattattatat-ttattagtggctactataat-aatatgcgatcttgatgttactatgattgtgtag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || ||||| ||| | || ||||||||| || |||   | |    | |     ||  |||||  ||   | ||| | |  | |  |||   |   | ||   |  |  ||||||        | |  | || |  |  |  || | ||  ||||| | |  ||
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagta-caacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatat-cag

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtag
||| ||||||||||||||| | ||||||||||| || ||||||||||||||||| ||||| || |||||||||||  ||||| |  ||   ||||| ||||||   |     |     ||  |    ||  |    |  ||  |      |   |     ||| |       ||  | | |||    |  ||| | || | ||   |||   || |  | ||| || |     
CCCCTCCTTCCACAACTACCGGATCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgcgctgagcgtgtgatatgatgcactagtcgattgat-cgcctgcttgcgc-tatgtccagcagatcgtgtatatggccg--tacca-aacattaattgatg--gacgacaatattatag-----

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggcta-ctataataatatgcgatcttgatgttactatgattgt-gtag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || || || ||| | || |||||||||   | |   |||  ||| |           ||||| |||| |||       | | |     | ||   | |      | |  ||| |   |    |  || || |  |||  || | || |  |||| | ||
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgca-agcgtagcgttgaa-----------gcata-atatgcat-------tctgtgggcctgtggcctgtggc--ctgtgggtgaccggccgagacgatgtgtgtgcttc-tgctgctctacttgttgcag

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggctactataataatatgcgatcttgatgttactatgattgtgtag
 |||||||||||||||||||| |||||||| |||||||| ||| | |||||||||||||||||||||||||||||  |||||||| |||| || || |||||||    | ||     ||  |  ||| ||  | ||   |  || | ||    |||  |    || |      |||     | |       |  |  | | |                               
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgtaac--tagttctttctttaatctaattagtttcaacgagttaaagattagaatagctggtgatgttgtggcttaaggggactcaaaaacatcaacaaagt-------------------------------

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttatt-agtggctactataataatatgcgatcttgatgttactatgattgtgtag
 ||||| ||||||||||||||||||||||||||  | ||| |  ||||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||| ||   || ||   |  ||   ||  ||||    | | | | ||  ||||  | ||   || |||| ||  | |||||||| | |   |  | |  ||||  ||                           
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactatacatata---tctcattcaaccaaatatccaaa-acatatg-atattaaaattagtaaatgattttatttatttatttatttatttatttgttaatgggcag-------------------------