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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCTGCAGGAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttccagttctagctacattatctgagtggacccgtatgtgcctagatttggagcagacatctgctgaggatcccccacataggtacacaaatct...

Basic information

species Glycine max
transcript GLYMA05G38180.5
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38180.5 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g69830.1 (Oryza sativa), 5'ss of exon 2
---AGGAGCTGCAGGAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttccagttctagctacattatctgagtggacccgtatgtgcctagatttggagcagacatctgctgaggatcccccacataggta-cacaaatct----
   |||||||||||||||||| | ||||||||||||   ||| |  | ||||| || || ||  |||| |    | | || |   ||||  | ||| |||| |||  ||    | | | | | | ||  |||     ||    | ||| | |           |   |||  |       |       |   |  |   ||       
AAGAGGAGCTGCAGGAAGCGGCTCGACGGGCACAACAAGCGGCGTCGGAAGCCGCAGCCTGATCCTCTCA---ACCCCGGCAACCTTTTCGCCAATCACCACGgtatgca---attgcaaaccatatgttcttga--gattgttctgttcttgacagcacgaaaattatccacaacaatcctttttttttactgtcgttaagtagtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207822575|gb|GD795658.1|GD795658
EST:     CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAG                         GCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
genomic: CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttcc ... attttatcagGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
EST: gi|14125394|gb|BG789832.1|BG789832
EST:     CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAG                         GCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
genomic: CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttcc ... attttatcagGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
EST: gi|193346117|gb|FK310533.1|FK310533
EST:     CCAACCAGAATCTCTAACGCGCTCTGG-AGTTTTTTGTCGAATTACCAAG                         GCACACAGTTGC-ACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
genomic: CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttcc ... attttatcagGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
EST: gi|193345445|gb|FK309216.1|FK309216
EST:     CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAG                         GCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
genomic: CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttcc ... attttatcagGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
EST: gi|193510119|gb|FK472105.1|FK472105
EST:     CCAACCAGAATCTCTAACGCGCTCTGGTAG-TTTTTGTCGAATTACCAAG                         GCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG
genomic: CCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGgttagcttcc ... attttatcagGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTG