Sequence
atgc intronic sequence ATGC exonic sequenceTGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgtatgcctccgtttttgggatcatcagtagaccttggctttatgcatttgttgtgaatattcaatcattgtaatttgtgttattgtttctgaagctcttg...
Basic information
species | Glycine max |
transcript | GLYMA05G37810.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g44570.1 (Oryza sativa), 5'ss of exon 4
TGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgta----------tgcctccgtttttgggatcatcagta--gaccttggctttatgcatttgttgtgaatattcaatcattgtaat-------ttgtgtt--attgtttctgaagctcttg--------------------
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CTGCTGGTGGTTGTTCTAGCATTGCAACTTCCTTCGTTTTTACACCCAGTGAATGCATAAAACAGCAGATGCAAGTGGGTTCACAGTATCAGAATTGCTGgtacacaatctcttgcctcattcttataattcattgccactgctacgtgccttgtttctctattaaaaaaacacctcgatttcaatagaaacatgacactacatttttcctcatccccttatacaagtttcatgacttcag
upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11440.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgta--tgcctccgtttttgggatcatcagtagaccttggctttatgcatttgt---tgtgaatattcaatcattgtaatttgtgttattgtttctgaagctc-ttg-------------------------------------------------------------------------------------
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TAGCTGGTGGTTCTGCAAGCATTGCAACTTCTTTTATCTTCACGCCTAGTGAGCGCATAAAACAGCAGATGCAAGTCAGTTCACATTATCGCAATTGCTGgtaaatatttgcaagcttaatctaaacttttgttaactgcttcatatacttccatgttctcttgtctcgtaaaggtttcctagcttaataaaattagttcacattgagatttgtttcccattaccctttctttaatttcctcttgtgctttcaatatgttctaatgatattttcatcacatatgaatacag
upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g03490.t01 (Vitis vinifera), 5'ss of exon 3
TGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgtatgcctccgtttttgggatcat-cagtagaccttggctttatgcatttgttgtgaatatt--caatcattgtaatttgtgttattgtt-tctgaagctcttg-----
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TGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAATTGGTTCACACTATCAAAACTGCTGgtata------tatttaagatcctgccatttgcttt--ttctatgcaacaaat-tcaatgttgctcacaattttaatatgcagtaatgtcatctctattgtctagaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58017466|gb|CX704208.1|CX704208EST: GAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTG GGATGTATTGGTTGGAATTATCAGAAATGGTGGTTTTTCCTCCCTATATGC
genomic: GAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgtatgcctcc ... atctgtgcagGGATGTATTGGTTGGAATTATCAGAAATGGTGGTTTTTCCTCCCTATATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGCAACTGCTGgtatgcctccgtttttgggatcatcagtagaccttggctttatgcatttgttgtgaatattcaatcattgtaatttgtgttattgtttctgaagctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG