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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttcatgttataattatatcttaactaactgtttggccttgccaatcagggccttgctttcttaccttatgctttacctctttttttttttcttg...

Basic information

species Glycine max
transcript GLYMA05G37160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 4
ATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttcatgttataattatatcttaactaactgtttggccttgccaatcagggccttgctttc--ttaccttatgctttacctctttttttttttcttg
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ATGCAGGAAAAGCAAATGTTTATCCACCTGAAATAATAGTTGACCATCAAGTCTATCTTCCACCTGCGCCTAGCCATCATCATGCCCATGGCCCCTTCTGgtaat-tttatttaaagagaatttccaaaactgctggctttatttgc-attcattatgtatccatgagttattgcattcaataatccaacataatttaacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471733|gb|CD413761.1|CD413761
EST:     CACAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: CACAATTCTCATGATCTCTACTGgtaatgttca ... tgatatttagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|37997101|gb|CF808690.1|CF808690
EST:     GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttca ... tgatatttagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|14991231|gb|BI316904.1|BI316904
EST:     GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTG                         CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
genomic: GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttca ... tgatatttagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAA
EST: gi|208135660|gb|GD938745.1|GD938745
EST:     GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTG                         CTCTGGTGGGG
genomic: GTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGgtaatgttca ... tgatatttagCTCTGGTGGGG