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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttcccattaattgagtgttggtaattgaacgttcag

Basic information

species Glycine max
transcript GLYMA05G36930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 4
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttcccattaattgagtgttg-gtaattgaacgttcag
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || || || ||||||||| ||||| |||| ||||||||||||     ||     | || | | || | | | | ||      || |    ||||   |  ||   |  | |   | ||    | | |||  |||            
CTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATgta----cttaacgca-aactctcttaagtaactaacgaaaacattt----gttgc-tagctattga--tattttactagcgcaattttgtataaccag--------

upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttcccattaattgag--tgttggtaattg-aacgttcag
 | |||||||| || |||||||||||||| ||||| |||||||| || || |||||||||||||| ||| ||||| |||| |||||||||||||       |   | |     ||||  | ||          |  ||||| || |     |    || | | ||  |   |||   ||||  |||||  || | ||||
TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaag-----atcccacag----gttttgtaatctg-------agattaaaattaagtgctttatcaattgttccgatgtctgaaactgttcttaatttcaatgatcag

upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccct--ttatgttaaagttgaacaaatacaaaactttccc---attaattgagtg-----ttggtaattgaacgttcag--
|| || || ||||  ||||||||||| |||||||||||||||||||| || || |||||||| || ||| | ||   |||||| |||  ||||  |  |  |       |||   |  |   | ||          ||      |||  |   | ||  |||||  |   ||||| ||  ||     |||||||||||  |||     
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattga-tgtttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677228|gb|BQ629579.1|BQ629579
EST:     GCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAAT                         GATGAATTGCTCTGGGCTGCTGCTTGGCTCTACCAAGCATCTAACAATCAG
genomic: GCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaatttttt ... gaacgttcagGATGAATTGCTCTGGGCTGCTGCTTGGCTCTACCAAGCATCTAACAATCAG