1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtacttttatacacatacacacaagctaatgtctgttattctatggaaatgaaattatataatctttccttaaatttttccttttgttgctaatgtctgctattctgtttcccctttccag
species | Glycine max |
transcript | GLYMA05G36620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAEST: gi|193703473|gb|FK641417.1|FK641417
genomic: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
EST: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAEST: gi|9987179|gb|BE661287.1|BE661287
genomic: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
EST: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAEST: gi|298192507|gb|HO036589.1|HO036589
genomic: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
EST: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAEST: gi|298188302|gb|HO034995.1|HO034995
genomic: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
EST: AATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAEST: gi|298186644|gb|HO037277.1|HO037277
genomic: AATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACT-CATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
EST: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAG GTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
genomic: TAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtactt ... ccctttccagGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAAGTTCTTGCCACAAATGGAGATACTCATCTTGGAGgtgagtacttttatacacatacacacaagctaatgtctgttattctatggaaatgaaattatataatctttccttaaatttttccttttgttgctaatgtctgctattctgtttcccctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG