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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaaacttatggacattgtatatctaactctctaggttatgttatttatttcttaccatgttatgaattgtgtcttaattattatatggttttgaaatggattaattgttgtgtgtggaag

Basic information

species Glycine max
transcript GLYMA05G36550.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g01450.1 (Oryza sativa), 5'ss of exon 5
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaaacttatggacattgtatatctaactctctaggttatgttatttatttcttaccatgttatgaattgtgtcttaattattatatggttttgaaatggattaattgttgtgtgtggaag
| |||||||| ||||| || |||||||| ||||||||||| ||||| || ||||||||  |||||||||||  |||  ||||  || | |||||||| |||||    ||    ||    | || | || |  |    | |   | | |    |  |||    |    || |  ||   | || | |    || || ||       |                   
TCATTGGAACCTACCAAGACTGGTGTGAGGCTTTCTCAACGTATCCGAGGACATATGACTTCATCCATGCTGATAAAATATTCAGCTTTTATCAGGACAGgtaatgcaagaactg--tgtggtgtgtccagtttatcaaggctt-taaaccgtcccttttttttccctgtagagt---tcaaatgtatcgtgtttctggttcattt-------------------

upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G164916_T02 (Zea mays), 5'ss of exon 6
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaa----------actta---------tggacattgtatatctaactctctaggttat---gttatttatttcttaccatgttatgaattgtgtcttaatt--attatatggttttgaaatggat-taattgttgtgtgtggaag---------------------
||||||| || ||||||||||||||||| ||||||||||| || || || || || || ||||||||||||  ||| || ||  |||  || ||||| |||||   ||            |||         | || ||| | | |     || ||| ||  |   ||| ||| | |  |  | |  | |     | | | | |||   | | | |||||| |||||     |  |   |   || ||                       
TTATTGGCACGTACCATGATTGGTGTGAGGCTTTCTCAACGTACCCGAGGACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatgcctttgctgtttaattctgctctagaaattttctttaccgttcactaagtcgtatggttttttgtatgatgtcttccttttgtgggcggccttatttggtaacaaggttttaaaatgcccacagcttaagcaagtagatactaactatggagtggtcgcag

upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G114570_T01 (Zea mays), 5'ss of exon 5
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaaacttatggacattgtatatctaactctctaggttatgttatttatttcttaccatgttatgaattgtgtcttaattattat-atg-gttttgaaatggattaattgttgtgtgtggaag
| || || || ||||| || ||||| ||||||||||| || ||||||||||||||||| ||| | ||||||   ||| | ||| |||| || || || ||||| |  |||| |||  | | | || | || ||   ||  |  |  |||  ||  |   | |  || |  |     |       || || | | ||||||  ||    |||   ||           
TCATCGGCACGTACCAGGACTGGTGCGAAGCTTTCTCGACGTATCCAAGAACATATGACCTCCTGCATGCTGACAATCTGTTTAGCATCTACCAAGACAGgtaagggaact-atgtgcttcg-atctttatct---taaatactactat--atggcaagcaaatttttttacaacatacaggccatcatgacgcgttttgttatcccctaaactttccag-------

upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G10440.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaaacttatggacattgtatatctaactctctaggttatgttatttatttcttaccatgttatgaat-tgtgtcttaattattatatggttttgaaatggattaattgttgtgtgtggaag
| || || || || || |||||||||||||  |||||||| ||||||||||| |||||| | || |||||  |     | ||  || ||||  |  |||||||   |   | |||| | |   |     |||| | |      ||  |      |  |   ||||| |   | | ||| ||||                                           
TGATAGGGACGTATCAAGATTGGTGTGAAGGATTCTCAACGTATCCAAGAACTTATGATATGATTCATGCAGGAGGATTGTTCAGCTTATACGAACATAGgtaa--agtttcatggtcttccaactcaaaactatat---ccgtgaaacgcgactaatggaatgttctttgtgtatgttttaag------------------------------------------

upper sequence: GLYMA05G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 4
TTATTGGAACTTACCATGATTGGTGTGAAGCTTTCTCAACTTATCCAAGAACATATGATCTCATCCATGCTAGTAATGTATTTGGCATATATCAGGATAGgtaggtaaacttatggacattgtatatctaactctctaggttatgttatttatttcttaccatgttatgaattgtgtcttaattattatatggttttgaaatggattaattgttgtgtgtggaag
| ||||| || || ||||| |||||||| || ||||| || |||||||||||||||||||| |||||||| || ||||| ||  ||||||||||||| |||||   ||||||   |||| |   |     | | |  | ||| || |      |    | | |||  | || ||||| || ||   |  |||                                 
TCATTGGGACATATCATGACTGGTGTGAGGCCTTCTCGACATATCCAAGAACATATGATCTGATCCATGCAAGCAATGTGTTCAGCATATATCAGGACAGgta---aaacttg-agacactcagtgc---aattttgatgttctgct------taacaatcttgtggttaaatgtgtgttcatatgtgcatgaag------------------------------