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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATGgtatgctccaactcctttgaacttgaatgctttcttataagttgtttctgatcttcccttatctagtatgtcccaattcccttgaaattgaatgctttct...

Basic information

species Glycine max
transcript GLYMA05G36530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g15900.2 (Oryza sativa), 5'ss of exon 1
AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATGgtatgctccaactcctttgaacttgaatgctttcttataagtt-gtttctgatcttcccttatctagtatgtcccaattcccttgaaattgaatgctttct
                                                           |||||| |||||| ||||||| ||||||||||||||| |       |||| |    ||  |    || ||||   ||  | | | |  |   |      | ||  |   ||   |  | || | |  |  ||   
-----------------------------------------------------------TGTGGATCCTTCGGTGGCTCCATCTCTTCTCATGgtaagtatgccgtcctctactgttttagctctttttatggcttcatctttcacgtagacagcgtaattacttggtaaaagcagt-aactagggtaattctc

upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G012319_T01 (Zea mays), 5'ss of exon 3
AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATGgtatgctccaactcctttgaacttgaatgctttcttataagttgtttctgatcttcccttatctagtatgtcccaattcccttgaaattgaatgctttct---
|||||||| ||  ||||  | ||  ||  |||||| || |||||||| ||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||     |||| ||  |||    |  | ||| ||  |  ||| ||    |      |  |  |    |  || | |   |    | | | |||     
AAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATGgtaagcttt---tcctgtgcccttcctcgactgcttctagctattttgtggaggtaggacttagatcagtcacagatacacaccagcaagcaaggttttaaag

upper sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 5
AAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATGgtatgctccaactcctttgaacttgaatgctttcttataagttgtttctg--atcttcccttatctagtatgtcccaattcccttgaaattgaatgctttct
|||||||| ||   |||  |||||||||||||||||||||| ||||| || || || || || |||||||| ||||| || |||||||||||||||   |   ||| | |      |     | |  || | | || |||  |  || |      | ||  | |       |  | || |||  | ||  | |  
AAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATGgtacaatgttacttcct--gttgtactctcctagttctgattttttttggcaatatgatggaaccttttgtcagtagttggctttcaaagagtataatgtaa