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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtcttctatcgtattctggaaaactaagtttttgttatcagctttttactagagacagatttgtagctttctcaaagcgagcttcttttgttt...

Basic information

species Glycine max
transcript GLYMA05G36500.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g45280.1 (Oryza sativa), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgt-tgtcttctatcgtattctggaaaactaagtttttgttatcagcttt---ttactagagacagatttgtagctttctcaaagcgagcttcttttgttt
||||||| ||  |||||||||||| || |  | |||||| || || || ||  | ||||||||||| |||||||| || ||||| |||||| ||||||||||||||   || ||||   | |    ||| |||  | | |  ||| |   |||   | ||| |  | ||   |      |  |||            |||||| 
GATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGgtttgtacttcatctactatct----gaatactttgatatcattaccctttttcaatcacttgttataggaattccatctcatcaggctctagcaactttgttc

upper sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G050701_T02 (Zea mays), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtcttctatcgtattctggaaaactaagtttttgttatcagctttttactagagacagatttgtagctttctcaaagcgagcttcttttgttt-----
|||||| ||   |||||||||||| ||||  |  |||||  | || || ||  | || || ||||| ||||||||||| ||||| ||||||||||||||||||||| || |  |||  || | |  ||   |  |||  |  |||  ||| | |   |   ||| | ||    | || |       | |   ||     |     
GATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACAGAGCTGAGAGATCCATCATTTATCGAGATTTCAAGACATCAAACATCTTGCTAGATGCGgtttgt-gtttcatatgttaatttttaa---tgtgttgataatatt-gctgtatttcaactacacacttaagaccttgttcggttaatcccgttacacatggatt

upper sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G157115_T01 (Zea mays), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtcttctatcgtattctggaaaactaagtttttgttatcagctttttactagagacagatttgtagctttctcaaagcgagcttcttttgttt--
|||||| ||   |||||||||||| ||||  |  ||||| || || || ||  | || || ||||| ||||||||||| ||||| |||||||||||||||||| || || |  | |  || | |  || | |  |||  |  |||  |||   |    |    |  |      | |  | || |     |   | |      
GATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACGGAGCTGAGAGATCCATCATTTATCGAGATTTCAAGACATCAAACATCTTGCTAGATGCGgttcgt-gtttcatttattaatttttaataatgtgttgatagtatt-gctgcatttatgctgtatttcaaccacatgtttaaggttgtttctgtataaaact

upper sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 5'ss of exon 4
GATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc--ttctatcgtattctggaaaactaagtttttgttatcagctttttactagagacagatttgtagctttctcaaagcgagcttcttttgttt----
|||||||||| |||| ||||  || || |||||||||||||||||||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||| ||  ||  |||| |   ||  |   |||  |   || |      |||   ||   || |  ||||    |||        |  ||||||    | ||     
GATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATACCGAGATTTCAAGACATCAAATATCTTGCTAGATGCGgttagtcatcagttctttgtcatggttttaaataagagttctaa----agcacattg--agtggaagataaaaagcacatatggaatgagcttaaaatattgtgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324398|gb|FK015749.1|FK015749
EST:     GGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCG                         GATTTCAACGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGTCCGATG
genomic: GGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGgtttgttgtc ... aaaccagcagGATTTCAACGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGTCCGATG