1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGTGAGGAGGGATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttgttttccctcctcaattttgtacacttggtcatcatcatttaagtggatgcacaattaggttccttcctttttggtgcaagtattttgtac...
species | Glycine max |
transcript | GLYMA05G36490.2 |
intron # | 4 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGEST: gi|15204361|gb|BI427129.1|BI427129
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
EST: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGEST: gi|15200643|gb|BI424454.1|BI424454
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
EST: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGEST: gi|192316702|gb|FK006405.1|FK006405
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
EST: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGEST: gi|192316701|gb|FK006404.1|FK006404
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
EST: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAGEST: gi|15286636|gb|BI470527.1|BI470527
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
EST: GATTAGTCCATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGAT GATCAGATAATATTTCCCAACGAGGCTATTTTTGAGAAG
genomic: GATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttg ... gctaacacagGATCAGATAATATTTCCCAATGAGGCTATTTTTGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAGGAGGGATTAGTACATTTTCAGTGGCTTGATCGCACACAAAATGTTGTTGAAGATgtatcctttgttttccctcctcaattttgtacacttggtcatcatcatttaagtggatgcacaattaggttccttcctttttggtgcaagtattttgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA