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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAATGTTGTGATGTTAATTGGGTTCTGTGTGGATGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAgtaaattcctttgaatccttaaatgttttttacccatactacatatctttgcagctgaaataatctgacatgttaattaccattatactccctaatgaaa...

Basic information

species Glycine max
transcript GLYMA05G36280.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36280.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g51190.2 (Oryza sativa), 5'ss of exon 4
CGCAATGTTGTGATGTTAATTGGGTTCTGTGTGGATGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAgtaaattcctt-tgaatccttaaatgttttttacccatactacatatctttgcagctgaaataatctgacatgttaattacca--ttatactccctaatgaaa
|| |||||||| ||| | ||||| |||||||| || ||    ||  | ||||||||||| || ||||| |||||||| || |||||||| ||||||||  ||||  |  || | | ||   ||||  | | |  |      | ||| ||| | |||     |||| | | | |  || ||| |  |   | ||    || |  
CGGAATGTTGTAATGCTGATTGGTTTCTGTGTCGAAGACAAGAGGCGTTTGCTAGTTTACGAGTACATTTGCAATGGATCGCTGGATTCCCATCTCTATGgtaagctaattattattctgcaaattctatgtgactgatgaatatagcttag-agcaagtttaatat-ata-gccaactactagctccaaatcatctataacc

upper sequence: GLYMA05G36280.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 4
CGCAATGTTGTGATGTTAATTGGGTTCTGTGTGGATGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAgtaaattcctttgaatcctta-----aatgttttttacccatactacatatctttgcagctgaaata---atctgacatgttaattaccattatactccctaatgaaa
||||||||||||||| |||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||| ||||| ||  |||||||   || | |  |||     ||| |  ||     ||| || | ||| | |||       ||   | |||||     |     || |    ||  |       
CGCAATGTTGTGATGCTAATCGGGTTCTGTGTGGAGGATGGAAGAAGGTTGCTGGTTTATGAATATATCTGCAATGGGTCTTTGGATTCCCATCTTTATGgtaaattgtcttcattttttatccacaatataattattttatagtaaa-atcatggcaatgtgcttatgaaactgactcccaagcagtcactgctttcttt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252447|gb|BG363358.1|BG363358
EST:     GCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACA                         GACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG
genomic: GCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAgtaaattcct ... gaatttgcagGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG