1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgattatctttatgactgagttgtaccatcattgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctag
species | Glycine max |
transcript | GLYMA05G36020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTACGGTCTEST: gi|208183266|gb|GD984036.1|GD984036
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193346442|gb|FK311726.1|FK311726
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAGTATGTTCGGTCTEST: gi|193621668|gb|FK568554.1|FK568554
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193393841|gb|FK359918.1|FK359918
genomic: GGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACTTGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208069085|gb|GD863827.1|GD863827
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208302418|gb|GE097033.1|GE097033
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|21638936|gb|BM139982.1|BM139982
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: ACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|120533128|gb|EH261261.1|EH261261
genomic: ACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208133373|gb|GD930396.1|GD930396
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|192302769|gb|FG993789.1|FG993789
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: ACTGTAAAGCTGGTCGGGGGAGGAGTACGACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208187070|gb|GD985114.1|GD985114
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTCCGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|192302768|gb|FG993788.1|FG993788
genomic: CGGGGGAGGAGTACAACAATTGT--GCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: ACTGTAAAGCTGGTCGGGGGAGGAGTACGACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208264236|gb|GE064356.1|GE064356
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208071910|gb|GD871438.1|GD871438
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|207781717|gb|GD754422.1|GD754422
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193324811|gb|FK290151.1|FK290151
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|254318674|gb|GR828618.1|GR828618
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193328494|gb|FK294710.1|FK294710
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193445325|gb|FK408048.1|FK408048
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTEST: gi|120533275|gb|EH261408.1|EH261408
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCT
EST: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|193538984|gb|FK497296.1|FK497296
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: CGGGGGAGGAGTACAACTTTAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208220451|gb|GE017671.1|GE017671
genomic: CGGGGGAGGAGTACAAC---AATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTEST: gi|208044651|gb|GD841075.1|GD841075
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCTCTGGAATATGTTCGGTCTEST: gi|208120625|gb|GD918012.1|GD918012
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgattatctttatgactgagttgtaccatcattgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctag
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG