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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATGTTGAAGCTAAGGTTGTTGTATCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgggattttgttgacatatattttgatagtttttttaactacaaaatgtagccttgggccatgctatattcagagcttaaccatatcttcctttata...

Basic information

species Glycine max
transcript GLYMA05G35860.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G061419_T01 (Zea mays), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTATCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgggattttgttgacatatatt-ttgatagtttttttaactacaaaatgtagccttgggc-catgctatattcagagcttaaccatatcttcctttata
||  || | || || ||||| || ||  |||| ||||||||||| ||||| || |||||||||||||||||||| ||  | |   ||    |  ||  | |||   | ||| |    |      |  |  ||    |    | |       ||||    || | | |   | | 
GACAATCTGGAGGCAAAGGTGGTCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaatgactttgtttccatcctcgatgtctatttcatggtctgttcatgacactgaatgctcattttggcttatgcttgtagatgt-tcctagtgt-

upper sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTATCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgg--gattttgttgacatatattttgatagtttttttaactacaaaatgtagc----cttgggccatgctatattcagagct--------taaccatatcttcctttata------------------------------------------------------------------------
|||||||||||||||||||| || ||  ||||||| |||||||| ||||| || |||||||| ||||| ||||||||   |||||| ||    | | |    ||| |||||||| ||      |||  |    |||    ||  || || ||| | |           | | ||||||||   |||                                                                        
GATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTGgtatgtatgattttttt----tttctcccaatattttttttatctctcctttgtgactgttcttaaatca-actgtaatcacaaccatgaaaagctaacttatcttccaacatacatttttcatttttgttgttcattcattggctttcgctgaatgttcctgtttctggcttctttttcttgaag

upper sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTATCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtatgggattttgttgacatatattttgatagtttttttaactacaaaatgtagccttgggccatgctatattcagagcttaaccatatcttcctttata-------
||| |||||||   |||| |||||||  ||| ||||||||||||||| ||||||||| |||| ||||| ||||||||  || |  ||   ||   ||     | | |  | |   | |  ||  |   |    ||||  ||| |||  |  |  |||   | | | | || |       
GATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTGgtatgtaatatgctt---atggcttccctcactctgctgagaaatatgattcactgt----ccattttattttccaaaatccacctattttacttgtacactctaaa