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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacctaatttaattattcaattgaacatttacataaacttaatttatatccaaaattggaatcaaaaactgaagtatcaaatatatatcttcata...

Basic information

species Glycine max
transcript GLYMA05G35610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacctaatttaattattcaattgaacatttaca---taaacttaattta-tatccaaaattggaatcaaaaac-tgaagtatcaaatatatatcttcata
|| |||||||| || ||||||||||||||||| |||||||| || || || |||||||| || |||||  ||  || | |    ||| ||||| |  |  ||||   ||| ||  || ||  |   |||| |||||| | |    || |||     ||    |    ||  
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaat---ctatgcaattaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274471|gb|BF324824.1|BF324824
EST:     TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG                         ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
EST: gi|13311263|gb|BG404896.1|BG404896
EST:     TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG                         ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
EST: gi|254327515|gb|GR837124.1|GR837124
EST:     TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG                         ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT