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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATTACAAGAAGCCATACATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcgcatggcaatagttgcctcgtttagtcatgaattgctgtgctagatcctgattgaccttttttttttcaaacacatttacag

Basic information

species Glycine max
transcript GLYMA05G35260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 4
TTCTGATTACAAGAAGCCATACATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcgcatggcaatagttgcctcgtttagtcatgaattgctgtgctagatcc--tgattgaccttttttttt--tcaaacacatttacag
   ||| ||    || || || ||| |||| ||||||||| | || ||||| |||||||||||  |||| || ||||||||||| ||||| || ||||||| |   |    |  | | | ||     ||||  |  | | ||  |    || || |  ||| |   | | ||  ||  |  | ||   || |||
ACATGAGTATGCAAAACCTTATATATGCTTGATGGATGGAGTGACAATGGGATTTGGAATTGGGCTATCAGGGCATGGCCGCTACCGCATTATTACAGAGgcaattttttgtctcca-atttat---gtttgtttttaatttcattatataaattctttgaatactcatcttgcttggtgtatcatcattgcag

upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 6
TTCTGATTACAAGAAGCCATACATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcgc-----atggcaatag--ttgcctcgtttagtca--tgaattgctgtgctagatcctgattgaccttttttttttcaaacacatttacag
|||||| ||||| || ||||| |||||| |||||||||| || || |||||||||||||||||  | ||||||||||| ||||| || ||  | ||||||||||  | ||     ||||  |||   |||  | |     |||  |  | |  ||| |||  | |||||     ||| ||| | | ||    ||| |||
TTCTGAGTACAAAAAACCATATATAAGCCTCATGGATGGCATTACAATGGGTTTTGGAATTGGACTGTCTGGTCATGGTCGCTACCGGATTGTCACAGAGgtataatggccatatatggacataaatttgttttgcaacttcaattagaataatgttctaatttctgata----tttatttgtactaatttgttt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207773587|gb|GD745705.1|GD745705
EST:     TTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTA
genomic: TTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcgc ... acatttacagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTA