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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatatgtgtgtccattatgagtaatgttgcctgagtgcctatcattttcttatgtttcacaccctttcttcttctgctacttctttgattagtta...

Basic information

species Glycine max
transcript GLYMA05G34360.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34360.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgta-tgtatatgtg---tgtccattatgagtaatgttgcctgagtgcctatcattttcttatgtttcacaccctttcttcttctgctacttctttgattagtta-
||| |||| |  || ||||| ||||| || |||||||| ||||| ||||| |||||||||||| | |||||||||||| | || || |||||||||||| | |||||||    ||||  ||  |   | | ||   ||      ||| ||||||| || |||    |    |  | | |   |  ||   |  ||  | | 
TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTGAAGTGTGATTTGACTGAAAATCTCACTCTGAAGGCTAATGCTCAGgtaatatatatgtcaactgtcactttcgctcacttttttttg--ccattataattttctaatatttagtgctaactgatttaccctttttttcctcctttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533034|gb|EH261167.1|EH261167
EST:     GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG                         CTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTG
genomic: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatat ... gcatgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTG
EST: gi|192296647|gb|FG991215.1|FG991215
EST:     GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG                         CTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
genomic: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatat ... gcatgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG