1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCATCAGTTACTCCAGTGATGTCTACAAATGTTCCTGTTGATACACATTTGAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttacatttttcctcctttgaacaattgtgactgcttccattattcaaaacagctggagtgtttttgatgaaattgataaacttagcactgaaatttagtttttctccctttagattaatcctatgtggttttggtgattttcatttccttctcactcttggttacttgtatag
species | Glycine max |
transcript | GLYMA05G34280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGEST: gi|6846393|gb|AW348683.1|AW348683
genomic: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
EST: GAGCAGCNNNNNTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGEST: gi|7042083|gb|AW471977.1|AW471977
genomic: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
EST: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGEST: gi|6095005|gb|AW119672.1|AW119672
genomic: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
EST: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAG GTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
genomic: GAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttac ... acttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCAGTTACTCCAGTGATGTCTACAAATGTTCCTGTTGATACACATTTGAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGgtaaccttacatttttcctcctttgaacaattgtgactgcttccattattcaaaacagctggagtgtttttgatgaaattgataaacttagcactgaaatttagtttttctccctttagattaatcctatgtggttttggtgattttcatttccttctcactcttggttacttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG