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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttcttttcttttaacatattttcttgggttctatataatataagcaattgaacatgcttgatatattgaattatgcatgcaattttaaatttatttcctttttgcag

Basic information

species Glycine max
transcript GLYMA05G33980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 4
GACTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttctt-ttcttttaacatattttcttgggttctatataatataagcaattgaacatgcttgatatattgaattatgcatgcaattttaaatttatttcctttttgcag
|| |||||||| ||||||||||||||||| |||||| | ||||| || |||||||||||||||||||| |   |||   || ||      |    | || | |||| |   |  ||     |  ||  | |    |    |  ||     ||  ||| |  |            
GATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAAgtaagcttataactctcagaagattggacttctattactgtttaattt---cttttacgtctcatttttcttccaatcctttgatatctcttagaatatgatg-----------

upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
GACTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttcttttcttttaa-catattttcttgggttctatataatataagcaattgaacatgcttgatatattgaattatgcatgcaattttaaatttatttcct--ttttgcag----------------------------------------------
|| ||||| || ||||||||||| ||||| |||||| | ||||| || |||||||| |||||||| |||||||     || |  |  | ||    | |||| |      | ||   ||| ||||||    | ||  ||| || |    ||| |    |  ||   |  | |||  |                                              
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactc--ttgctatttctccctaccag--gaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag

upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 4
GACTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttcttttcttttaacatattttcttgggttctatataatataagcaattgaacatgcttgatatattgaattatgcatgcaattttaaatttatttcctttttgcag
|||||||||||||| || ||||||||||| |||||| | ||||| || |||||||| || ||||| |  ||||  |||   |||| |     | || | |     |  ||   || ||     || ||   || || ||   | |  ||  |||| | |   |          
GACTATGTTGCAACCCGATGGTACCGTGCTCCTGAACTTTGTGGCTCCTTTTTCTCCAAGgtaaggtggtttttatttttgatatctcaaaagtttattttggccaccagatcttcaattatgtttat---ttaaagtaaataagatataataaaatgagcac----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306378|gb|FG996138.1|FG996138
EST:     CAACTCGGTGGTACCGTGCACCTGAATTATGTGGTCCTTTTTTCTCAAAA                         TACACCCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCAGAA-TG
genomic: CAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttct ... ctttttgcagTACACCCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCAGAAATG