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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACCTTTTGTGGACAAGTATTTTCTTAAGCCAAAGGACCACAAGTATGACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcactcgatcattattataccatcacaacaaattaacataaaaaaaaacaatttaatacgatttgacaaccttgtcttctttttttcggtttggaacatag

Basic information

species Glycine max
transcript GLYMA05G33640.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270123|gb|BM886379.1|BM886379
EST:     AGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCGAGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: AGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|208132534|gb|GD929935.1|GD929935
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|208143951|gb|GD941568.1|GD941568
EST:     AGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: AGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|151396212|gb|EV266089.1|EV266089
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|18848901|gb|BM568011.1|BM568011
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCC
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCC
EST: gi|151406975|gb|EV276790.1|EV276790
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|193326435|gb|FK291518.1|FK291518
EST:     AAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: AAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|120534060|gb|EH262193.1|EH262193
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|254314579|gb|GR829572.1|GR829572
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATA-TTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTTGCCAAGTGGAAGATTGTTGT
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTAC-TGCCAAGTGGAAGATTGTTGT
EST: gi|11274883|gb|BF325208.1|BF325208
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|254314578|gb|GR829571.1|GR829571
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|207762677|gb|GD732908.1|GD732908
EST:     AAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGAATTCTACTGCCAAGTGGAAGATTGTTGT
genomic: AAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGG-ATTCTACTGCCAAGTGGAAGATTGTTGT
EST: gi|193588085|gb|FK543106.1|FK543106
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|9987619|gb|BE661727.1|BE661727
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|192299309|gb|FG990734.1|FG990734
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTTGTTGT
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATT-GTTGT
EST: gi|207821442|gb|GD790157.1|GD790157
EST:     AAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: AAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|192328997|gb|FK019696.1|FK019696
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTTGTTGT
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATT-GTTGT
EST: gi|192301322|gb|FG990212.1|FG990212
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: gi|308098252|gb|HO759993.1|HO759993
EST:     ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG                         GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACACCTTTTGTGGACAAGTATTTTCTTAAGCCAAAGGACCACAAGTATGACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcactcgatcattattataccatcacaacaaattaacataaaaaaaaacaatttaatacgatttgacaaccttgtcttctttttttcggtttggaacatag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG