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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaactcttctgaattgatgtgtgcag

Basic information

species Glycine max
transcript GLYMA05G33560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgt-tcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaactcttc-tgaattgatgtgtgcag-------------------------------------
| | ||||| ||||| || || || ||||| |||||||| ||||| || || || ||||||||||| || || || || || |||||||||||| ||||||| |       |  |   ||        |  |     ||||| |||| || |||||||  |    |    |  |   || | ||                                        
GCTTATAGTCTGTGAGCTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTCAACAGAGAATCAGGAGGCGAGGTCTATTTCACAATGCCAAGACTGCAGgtattactagctagctaataggatccagtaatggtgattaatgtttt-tactctcagtaaatggacacaatataccaatttttgtgacaataattgattttccttttgcgtaccctttctgcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgcc-atttac----ttcatgatgtttaattttaatcttttctattctcagtgcaa-----------actcttctgaattgatgtgtgcag-------------------------
| | ||||| |||||||| || || |||||  ||||||||||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||| | |||||   |  | | || | |||     | ||| |   || | || |   ||  | |     | || ||           | | ||    |||||| ||   |                          
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgat-tgaatattttttctttgttgtgcccttggcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttca-tgatgtttaattttaatct--tttctattctcagtgcaaactcttctgaattgatgtgtgcag----------------------------------
| | ||||| |||||||| || || |||||  |||| |||||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||| |||||||    | || || |  |  | || | ||||| | || |  | |   | | | |  ||   ||   |  |   | ||      |  |                                   
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtattac-tgagctaggttatccactaatgttgacttattgtttgactaccagtaacaaaacacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaactcttctgaattgatgt---gtgcag
|||||||||||||||||| || || ||||||||||||||||| || || |||||||| |||||||| || || || || || || |||||||||||||||||| | |     |  |     |||| | |||| || |   | ||  ||  ||||    ||   |||||| |||  |  |   ||||||
GTTAATAGTATGTGAACTTCTCAAGGCAAACTTGTATGAGTTCCAAAAGTTTAATAGGGAATCAGGGGGAGAGGTTTATTTCACTATGCCAAGATTGCAGgttagccaacatctttactactcatca-gttttatgtatgttttcactgctctct---cattttcttctaaatcaaaatattgtgcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcg--tgtgccatttactt-catgatgtttaattttaatcttttctattctcagtgcaaactcttctgaattgatgtgtgcag
| |||| ||||||||||| ||||| || ||  | || ||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||||||||| |||   | |  ||||  | | ||| ||   ||  | || | | | | ||||    |     |||||  | |  | | ||| |||
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtccactttatcattaccatacatcatagatatgtata-tgtatccgattcctgat-----ctctttgggaccgttctgtacag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaa-ctcttctgaattgatgtgtgcag
| |||| ||||||||||| ||||| || ||  | || || || || |||||||| |||||||||||||||||||| || || || |||||||||||||||||| |||  |   |||   | | |  ||  |||||    || | |   | ||  ||| | || |||||  | || | | ||| |||
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtc-cgcttcat---cattaacattcttaata--gatatgtataaatccgagttctaatctctttgggatcgttctgtacag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaact-cttctgaattgatgtgtgcag
 ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||||| || || || || ||||| |||||||||||||||||||||  | | ||  |||||      |||| | |   | |  |  |  |         || || || ||| | ||||| | |||||||
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgtt-atggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttc-atgatgtt--taattttaatctt-------------ttctattctcagtgcaaactcttctgaattgatgtgtgcag
||| ||||| |||||  |||||  ||| || ||||| ||||| || ||||  || ||||||||||||||||| ||||||||||| |||||  |  | |||||   |       | || |   | ||| ||||  || || |  ||||             |  || | |   || ||      ||  || ||||| |  | 
GTTCATAGTTTGTGAGTTACTTCGAGCTAATTTGTACGAGTTCCACAAATACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttcacatccttgatgccgatgttgttcatagttctgctcttacaagcataatattattactttacttgtaagtgaacctagatagatgtctata-

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 12
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttc--atgatgtttaattttaatcttttctattctcagtg----caaactcttctgaattgatgtgt-gcag--------
||| || || |||||  |||||  ||| ||| | || |||||||||||||  || |||||||||||||| || ||||||||||| |||||  |  | |||||  ||  | |     ||| | |  | | ||||||  |||  |  | | || | || |||    ||| |   |    |||||| | | | ||        
GTTCATCGTTTGTGAGTTACTTCGAGCTAACCTATACGAGTTTCATAAATACAACAGAGAATCAGGTGGCGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtgttctctcatccttaatcccgacgttgtttacgtttttttctctttactatctgtgttgacaatccacttatgattgatttatagtagatttccct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295803|gb|FG992614.1|FG992614
EST:     TTAATAGAGAATCACGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAG                         TCA-TTACCATTCAGTGTTTGGAAGCTCTT
genomic: TTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtg ... atgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTT