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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag

Basic information

species Glycine max
transcript GLYMA05G31940.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagt-gtttcct-tctcttgaaatgaaaacttcag
  | || || || || ||| | ||||| ||||| |||||||| || || ||||| || ||||| || |||||||||||||| ||||| || |||||||||||    ||| |  ||  ||||  ||  |   |||  ||| |||  |  |         | || |  || | ||  | ||||| |  ||||| |              
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaaatccttcta---tattcaatgttagaatgg---------agggcacatactaattttcgtttcatgcctcttcag-------------

upper sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag
| | ||  | || || || || ||||||||||| ||||||||  | || ||||| || ||||| || |||||||||||||| ||||| || ||||| ||||| |  | | |   ||  | |  ||| |   | |  | |||||  | ||     ||   |  ||   ||||        | | | | |                 
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaacta--agtcctttaa---tgttcacttttagaattg-----gatgcatatactaatttgctcctcatgcctttttcag--------------

upper sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaa--ctagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag
  | || ||||| || ||  | || |||| ||| ||||||||  | || || ||||| |||||||| |||||||||||||| ||||| || ||||||||||| |    |||   |||    ||| | | |   |||   | || |||   |    |   || | |  |||| | |    ||| |                       
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttg-gtattctataagtatattggagttaaac---gtatatactaatgctgtgtatct-tgcccttttcag---------------------

upper sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgt-aactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag
 || ||  || |||| ||  | | |||||| || ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || ||||||||||| |  |        | |  | ||||||      |     | | | | |     |  ||||| ||   | ||||     ||| ||||||| |||     |  ||||
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttt--tttcaaagttaca-agttatg----ttctttctcttcaaactttgatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208295895|gb|GE090871.1|GE090871
EST:     GGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: GGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|207840070|gb|GD809591.1|GD809591
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|15200449|gb|BI424355.1|BI424355
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|193411723|gb|FK381658.1|FK381658
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|298180404|gb|HO021957.1|HO021957
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG