1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCACTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatctaatttgctgtgttaatgttttttctattatcttattatatttttcatcaaatgatttttttatttgtttattttttggcag
species | Glycine max |
transcript | GLYMA05G31920.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGEST: gi|51343512|gb|CO984245.1|CO984245
genomic: CAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGEST: gi|208112271|gb|GD913684.1|GD913684
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATACAGGCTCCTGGCCAACACTGCTCTGGCAGEST: gi|208063578|gb|GD861508.1|GD861508
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATGCAGGCEST: gi|192306267|gb|FG995075.1|FG995075
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGC
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGEST: gi|192306268|gb|FG995076.1|FG995076
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGTCAGATTTGGTGGCAGAGATGCCATTCAAGATTTGTTATCCTGCACTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatctaatttgctgtgttaatgttttttctattatcttattatatttttcatcaaatgatttttttatttgtttattttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC