Sequence
atgc intronic sequence ATGC exonic sequenceAGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggtttttgtgacaaaaattgtaatgaagattaagggttgtgctttgctgtgtattttactgattactgtttgatgctgaaatcttgaatatgatgcc...
Basic information
species | Glycine max |
transcript | GLYMA05G31870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G169914_T03 (Zea mays), 5'ss of exon 2
AGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggtttttgtgacaaaaattgtaatgaagattaagggttgtgctttgctgtgtattttactgattactgtttga-tgctgaaatcttgaat--atgatgcc----
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AGGGGGCCTTGGCTGGAGGAGCTGCTGGTGTTGTTGTTGAAACAGCTTTATATCCTATTGATACAATAAAGACCAGGCTTCAGgtaagctgattttaca----tttgaatgcagcaccccgtttgt--ctagcttatcatgcaacc-atcattctccaagttgttcattctcggatgcatggtaatacac
upper sequence: GLYMA05G31870.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G39460.2 (Arabidopsis thaliana), 5'ss of exon 4
AGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggtttttgtgacaaaaat-tgtaatgaagatt-----aagggt-tgtgctttgctg-tgtattttactgattactgt-----ttgatgctgaaatcttgaa----tatgatgcc-------------
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AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGgtcaacgaactttaaatctctgttagacattcttttaactgtatgcaattagctactgtactactttggttaaaaaaagtgttgacctttagttcctaaactagtttgatcttatgatgtaggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120528780|gb|EH256914.1|EH256914EST: TTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAG GCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCCGGATTG
genomic: TTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggttttt ... ttttccctagGCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCCGGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACAATAAAAACACGTCTGCAGgcaggtttttgtgacaaaaattgtaatgaagattaagggttgtgctttgctgtgtattttactgattactgtttgatgctgaaatcttgaatatgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG