Sequence
atgc intronic sequence ATGC exonic sequenceGAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAGgttagtatgctaattgctcatcttctcttcatggggagaaaatgcatttaattaatagcaagtaaattatgtgtaattggaatgcacaatagaccagtag...
Basic information
species | Glycine max |
transcript | GLYMA05G31730.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G31730.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G21940.4 (Arabidopsis thaliana), 5'ss of exon 5
GAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAGgttagtat--gctaattgctcatcttctcttcatgggg-agaaaatgcatttaa---ttaatagcaagtaaattatgtgtaattggaatgcacaatagaccagtag---------------------------------
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GAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTGgtatgtatatgctactgaagcaaagcctttatatgttttatatgcttcaatagaagtctcctggaaaacattttatatg-atttggtgttagttatgaatgtgttttgtaaccttctataagttttgtggttgtgtcag
upper sequence: GLYMA05G31730.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g01600.t01 (Vitis vinifera), 5'ss of exon 5
GAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAGgttagtatgctaattgctcatcttctcttcatggggagaaaatgcatttaattaatagcaagtaaattatgtgtaattggaatgcacaatagaccagtag------
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GGATGATGGGTTCTGGAAAAACAACTATTGGCAAGATTTTGTCAGAAGTGCTTGGTTATTCATTTTGCGACAGgtttgaaccatgcttgctcat-ttctgttctcttgcaaaaa---catttaagtagtgacgaacaaa--attttcacttcatgtagagtattgttagatgacacactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254327598|gb|GR837207.1|GR837207EST: ACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAG TGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCCGATATATT
genomic: ACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAGgttagtatgc ... ggtgttgtagTGATGCATTGGTGGAGGAGGAGGTTGGTGGAAACTCTGTAGCCGATATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAGgttagtatgctaattgctcatcttctcttcatggggagaaaatgcatttaattaatagcaagtaaattatgtgtaattggaatgcacaatagaccagtag
- - - - - - - - - - - - - - - GGAAGA