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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTATTGGTTGGAAACAAAACTGATCTTGTAGATAAGAGgtgagtgctaatttggtttacatgattctgtttaatatatagaaaagttaaattcttattgttttgttaagcggatgttttagtgttttttattatcata...

Basic information

species Glycine max
transcript GLYMA05G31200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 4
TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTATTGGTTGGAAACAAAACTGATCTTGTAGATAAGAGgtgagtgctaatttggtttacatgatt--ctgtttaatatatagaaaagttaaattcttattgttttgttaagcggatgttttagtgttttttattatcata
||||||||||   ||||||| ||||||| || ||||||||||| |||| |||||| ||||||||  | ||||| || ||||| |||||||| ||||| |||| |    ||   |  ||    || |   |  ||  |  | | |  ||  | | ||  | |||     |          || |     |||| | |  ||  
TTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCTTGTTGATAAAAGgttatatttatactcattactgtgttggacaattccaagtctggtgaatctcagttacttttgacccat-ggctttcctttctctcaattttaactgccaa-

upper sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S353_41V6.1 (Physcomitrella patens), 5'ss of exon 5
TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTATTGGTTGGAAACAAAACTGATCTTGTAGATAAGAGgtgagt-gctaatttggtttacatgattctgtttaatatatagaaaagttaaattcttattgttttgt--taagcggatgttttagtgttttttattatcata
| ||||| ||       ||||| || || || || || || ||||| ||||||||||||||| |  | ||||| || || ||||||||| | |||||||||||||| | | |    | |||  |  | ||||   |    || | ||      ||| |     | |||  || | ||||    |||  ||   | || |    
TCCTGAATACAGCTCGTTGGGTGGAAGAAGTACGAACGGAGCGTGGGAGTGATGTTATTATTATGCTAGTTGGCAATAAGACTGATCTTCTTGATAAGAGgtgagtagattaacatgcttaatttttcctgtcggagtgctaaataatccgtcttcatgaacatatgtcctaggtggattcagtaggattaaatgttctg---