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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCACGAGTTTCTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccatcttactttatccgtattctgttctatcaattttttattcttttgggacaataatttgtaatggaatgaatgctacattcacttcctgcag

Basic information

species Glycine max
transcript GLYMA05G30160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G06599.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCTTCACGAGTTTCTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccatcttactttatccgtattctgttctatcaattttttattcttttgggacaataatttgtaatggaatgaatgctacattcacttcctgcag
| || || |||||||||||| ||| |||| |||| ||||| || ||||| |||||||| |||||||  ||   |  |   ||   | | ||    |   |  |  |||| |   | ||          |  |  | || | |    | | ||   || ||||||
ATCTCCATGAGTTTCTTACTGCTGCTTATGCGGAATATGATATCATGATTTGGTCTGCTACCAGgtgatgttgttgttagtttgacattttaatcttcgtgtagcttttgtagctctg---------ctgatgctagagtta----tccgtttggtttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193631354|gb|FK583731.1|FK583731
EST:     CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAG                         CATGAAGTGGATTAAAG-CAAGAT
genomic: CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGAT
EST: gi|151393341|gb|EV263216.1|EV263216
EST:     CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAG                         CATGAAGTGGATCAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
genomic: CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
EST: gi|192305352|gb|FG994034.1|FG994034
EST:     ATGATATGGTCTGCAACCAG                         CATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
genomic: ATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC