1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTTGGTGGAACTCGCCGAGCTTCAGGACCGAGAAGTCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcatcgctctctgtttggttggcactttgtgttttgtgtttatctcagatgtagctaactaacgagtgtgagtgttcttttctgcag
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGTEST: gi|213606653|gb|DB959065.1|DB959065
genomic: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcat ... ttttctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
EST: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAAACA-GATTCATCCTACCTCGATTATCAGEST: gi|16278540|gb|BI942958.1|BI942958
genomic: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcat ... ttttctgcagAGGGCAAATGACCTTGTCAGGAA-CAAGATTCATCCTACCTCGATTATCAG
EST: TCGGATACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTAEST: gi|16278153|gb|BI942753.1|BI942753
genomic: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcat ... ttttctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTA
EST: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAA AGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
genomic: TCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcat ... ttttctgcagAGGGCAAATGACCTTGTCAGGAACAAGATTCATCCTACCTCGATTATCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGGTGGAACTCGCCGAGCTTCAGGACCGAGAAGTCGGAGACGGCACTACTTCGGTCGTCATTGTCGCTGCTGAGCTTCTCAAAgtaactgcatcgctctctgtttggttggcactttgtgttttgtgtttatctcagatgtagctaactaacgagtgtgagtgttcttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT