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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAACCTTAAGGAAGTTCCTGATGAAAATGGAGACCTCAGACTGGAGGTTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgtacacaaagatgatgaacattcttaataatttgcagctcttcaaatcattatcttcttcaccttcaaaatctacacataaatctctcttgccttcactt...

Basic information

species Glycine max
transcript GLYMA05G29820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g47450.1 (Oryza sativa), 5'ss of exon 3
AATAAACCTTAAGGAAGTTCCTGATGAAAATGGAGACCTCAGACTGGAGGTTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgta-cacaaagatgatgaacattcttaataatttgcagc----tcttcaaatcattatcttcttcaccttcaaaatctacacataaatctctcttgccttcactt
| ||||| | |  ||| ||||||| |  |||||      ||   ||  |||  | ||  | ||||| ||||| ||||| || ||||||||||||||||||||| ||  ||    |   | || |||   |||| | ||       ||  |||||| |  ||  |    || |  || ||   ||   | | | ||   |      
ATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGgtatcaacaactcaacatatatacttttcaattagtaggcatgcttttcaatcataacattggtttgattgactatttaattatttttatgttttatgta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533174|gb|EH261307.1|EH261307
EST:     TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAG                         GGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
genomic: TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgtacacaaag ... tctctgctagGGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
EST: gi|9258053|gb|BE346200.1|BE346200
EST:     TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAG                         GGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
genomic: TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgtacacaaag ... tctctgctagGGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
EST: gi|120532592|gb|EH260725.1|EH260725
EST:     TTCTGGGAAT-ATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAG                         GGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
genomic: TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgtacacaaag ... tctctgctagGGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
EST: gi|26057180|gb|CA800094.1|CA800094
EST:     TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAG                         GGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA
genomic: TTCTGGGAATTATATTGGATGGTCCTGCTCATTCTGCTGGTGTTAGACAGgtacacaaag ... tctctgctagGGGGATGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCA