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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggacttttcatatgttgttcaggtgtacaagttcaaaacgagattatattagttttatctcctagccacatcttaatttatatgagtattcctagctg...

Basic information

species Glycine max
transcript GLYMA05G29700.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193730742|gb|FK663112.1|FK663112
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGAC
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGAC
EST: gi|193513257|gb|FK470021.1|FK470021
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGAC
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGAC
EST: gi|193396156|gb|FK361911.1|FK361911
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAA
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAA
EST: gi|151393188|gb|EV263063.1|EV263063
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
EST: gi|209698264|gb|BW667553.1|BW667553
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
EST: gi|151413137|gb|EV282945.1|EV282945
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTTGAGACAAATGATCAATGGTGTTCCTTTTGGAGGATG
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTT-GAGACAAATGATCAATGGTGTTCCTTT-GGAGGATG
EST: gi|193443747|gb|FK405671.1|FK405671
EST:     AAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
genomic: AAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAATGATCAATGGTGTTCCTTTGGAGGATGCT
EST: gi|208048537|gb|GD847496.1|GD847496
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAATGATCAATGG
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAATGATCAATGG
EST: gi|193686261|gb|FK625948.1|FK625948
EST:     GCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAA
genomic: GCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTT-ATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAA
EST: gi|193515808|gb|FK475148.1|FK475148
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAA
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAA
EST: gi|193700820|gb|FK636807.1|FK636807
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGAC
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGAC
EST: gi|193721240|gb|FK659922.1|FK659922
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAA
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAA
EST: gi|208203101|gb|GD997533.1|GD997533
EST:     AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAG                         GTATTGGATCCTTTGAGACAAA
genomic: AGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggactttt ... caatttccagGTATTGGATCCTTTGAGACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCATGTGGAAAAGGAGCACGAAGAATTAAATCGGCTTTTATCTACACAGgtggacttttcatatgttgttcaggtgtacaagttcaaaacgagattatattagttttatctcctagccacatcttaatttatatgagtattcctagctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA