Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaaggctgaaaataaaaattactttgaaagtatatgtcagccttagcaatattctgacttctatattgttttactattacag

Basic information

species Glycine max
transcript GLYMA05G29410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g01700.t01 (Vitis vinifera), 5'ss of exon 4
TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaaggctgaaaat-aaaaattactttgaaagtatatgtcagccttagca-atattctgacttctatattgttttactatta--cag
 || ||||||||||| |||||||| |||||||| ||||| ||| | || |||| ||||||||   |||||||||||||     |   | ||| |||||   |        | | || |       |||  |||||||||  |    || |||   | ||   |||
GGCCTATCGTGCATTATACATCCTCAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtgtcaataattaaaaagagcaacatttttttgtggccattgatgcatgtattctgaccgcatctttttttctttgtttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405068|gb|EV274882.1|EV274882
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|192294404|gb|FG987333.1|FG987333
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAG-TGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|16343489|gb|BI969084.1|BI969084
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|193492847|gb|FK459569.1|FK459569
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|22933449|gb|BU550588.1|BU550588
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|6726058|gb|AW310457.1|AW310457
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: gi|6502251|gb|AW203624.1|AW203624
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTGTACTACATGGATAG                         CTTGTGTCTCATGTGTTGTACAGACAG
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAG
EST: gi|192300473|gb|FG991485.1|FG991485
EST:     GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG                         CTTGTGTCTCATGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaaggctgaaaataaaaattactttgaaagtatatgtcagccttagcaatattctgacttctatattgttttactattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA