1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAGgtcagtgttgtttcatatatatatatatatatatatttatgttttttttttaggatgtttcattaatcaaatcggaggtggttcgtggtttcatgagaaa...
species | Glycine max |
transcript | GLYMA05G28040.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAG GCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATTEST: gi|20811766|gb|BQ296244.1|BQ296244
genomic: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAGgtcagtgttg ... tgtgccacagGCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATT
EST: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAG GCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATTEST: gi|193558777|gb|FK510774.1|FK510774
genomic: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAGgtcagtgttg ... tgtgccacagGCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATT
EST: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAG GCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATT
genomic: TGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAGgtcagtgttg ... tgtgccacagGCAGAGAAACCTTCTTGGAATTCTATTGGAATTTTTAAAGTATCAAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCACACTGTATATTTCATGGCAGGGACTCAGgtcagtgttgtttcatatatatatatatatatatatttatgttttttttttaggatgtttcattaatcaaatcggaggtggttcgtggtttcatgagaaa
- - - - - - - - - - - - - - - - - - AAAGAA