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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgtctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact...

Basic information

species Glycine max
transcript GLYMA05G27640.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgta---tgtattcatattaaacatgcacatttagtcgtc-taactgtatgttca-aattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact
||||||| || |||||||||||||| ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||    |||||   |  |   |    || ||| |     || |    || |   |||| |  ||    |||  | || |  | | | |    ||  || ||| |
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggata----catattctgagcctttcttttctgaactat-gcagt

upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgt-ctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact------
||||||| || |||||||||||||| ||| | ||| | |||||||| |||||| ||||||||||| ||||||| ||||| || ||||||||| |  | |||||  || |  | | | |       | ||| | |  || | ||   ||   ||   |  |   ||     |   | | | || |  |    |   || |||      
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcaca-------acttaattgcacttattgacagtagcaacctgcttgcaatttggatacatat-tctgagcctttcttttctgaactatgcag

upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G439168_T02 (Zea mays), 5'ss of exon 5
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgtctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact----------
||||||| || |||||||| ||||| ||| | ||| | |||||||| |||||  ||||||||||| ||||||| ||||| || || ||| |  |  | |||||  ||    |          ||  |||  |  | |   |||   ||   || ||     || | |||  | ||  | |  | ||  ||| |  |  ||          
TGGAAAGGGAGGATGAATGCGGGATCTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCCATAGGGACTGgtaattacctct--------cacaattttcattatttgtatgtgaatttggataggctatgcaac-ttggatatggattt-cgagtctaattaaagtgctacattttagt

upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G171967_T01 (Zea mays), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgtctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact----------
||||||| || |||||||| ||||| ||| | ||| | |||||||| |||||  ||||||||||| ||||||| ||||| || || |||||  |  | |||||  ||    |          ||  |||  |  |||   |||   ||  ||  || ||||     |||  | ||  | |  | ||  ||| |  |  ||          
TGGAAAGGGAGGATGAATGCGGGATTTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCTATAGGGACTGgtaattacctct--------cacaattttcattatctgtatgtgaatttgaacagg-ctatgcaatttggatatggattt-cgagtctaattaaagtgctacattttagt

upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgtctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact
| ||  | ||||| ||||| || || || |||||  |||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||| ||||| |||||| ||  || |     ||  |   ||   |  |  | || | ||  |  ||   | ||     ||   ||   |       | | ||           
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacaca-----cacactttttagtttttagacctttttgacctgatgcatttactga-atctcgttgattctcaaatctgcag----------

upper sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattca--tattaaacatgcacatttagtcgtctaactgta----tgttcaaattggtctatcatcattgtgtgtg-tgtgtgtgtgtacaatgattgcact-----------------
|| |||| |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||  | ||||| ||    |  ||  |    || |  ||   |  |||  || ||    | | ||| |   |  || |   |   |  || | | | | | |||| |  |     |                 
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347421|gb|GR853670.1|GR853670
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|22522945|gb|BU081756.1|BU081756
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|15201711|gb|BI425017.1|BI425017
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|254347420|gb|GR853669.1|GR853669
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|20812773|gb|BQ297251.1|BQ297251
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|31307506|gb|CD392709.1|CD392709
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|192304134|gb|FG995350.1|FG995350
EST:     GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: GTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
EST: gi|7233514|gb|AW568859.1|AW568859
EST:     TGTATCAAATGCTACCGCAAGTG                         GAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT
genomic: TGTATCAAATGCTACCGCAAGTGgtatgtattc ... caacctgcagGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGT