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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag

Basic information

species Glycine max
transcript GLYMA05G26630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag
 |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || ||||  ||||  | | | | |  |||||   | | |  | |             || ||||  | || |  | |  | || ||| | ||  || ||                 
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttg-gatatattttggttttgtcccat-------------gggtgtttttgttctcattggttcatgatggcatt--tgttag----------------

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 4
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag
||  | |||||| |  | || || |||||  | ||||| ||||| || || |||||||| || || || |||||||||||||||||||| |||| |                             |||||||||   |   ||||     |  | |||||      |  || || || | |   |  ||| ||||||    ||
ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAGgta-----------------------------tttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgtt-cctgttctctag

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 5
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag
||  | |||||| |  | || || |||||  | ||||| ||||| || || |||||||| || || || |||||||||||||||||||| |||| |                             |||| |||||  |   || |     |  | |||||      |  || || || | |   |  ||| ||||||    ||
ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAGgta-----------------------------tttccttttatctctgttagacctctattgttttgtcaatgttgttgtgcctcttaatttttgtt-cctgttctctag

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagt-tgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttg---ctattttggtggcctgattatgactttgatgctacgttacctgtttggcag
||| | ||||||||||||||||| || || |||||||||||||| || || ||||| ||  |||| || || ||||| |||||||| ||||||| ||   |  ||||    |  ||||| | | |  || ||  |   | | |   ||| ||    |||| ||||  |                                       
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatatttactctatcttggcag---------------------------------------

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcag
||| | ||||||||||| ||||| || || |||||||||||||| || || ||||| ||  |||| || ||||||||||| |||||||| ||||       | ||  |  ||  | | ||  | |||  |||||  | |      | |  |    ||||| |    |  |||  ||| |  || |  |  |            
ATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGGTTCTTTTCTGGGCTGAAATTTATTATCAGgt------agtttctaatgagtatctatgggtttctttttttgtcaat----gcttctttggttttgatattttacttaacactcttttgattggacag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334723|gb|CO978589.1|CO978589
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|213600472|gb|DB970324.1|DB970324
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTC
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTC
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG                         GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACAATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT