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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAACAGATGACGTGCTTGTGGCCATCGACAGTGGTAAATCTGAAGGTGGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatcttttttttttttctctcaaaaaattcaatatcctatgaattctatcttctgtgtgttgaagtttcattagtttctcttcctaaaaaattgg...

Basic information

species Glycine max
transcript GLYMA05G26250.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26250.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G63980.1 (Arabidopsis thaliana), 5'ss of exon 4
TAACAACAGATGACGTGCTTGTGGCCATCGACAGTGGTAAATCTGAAGGTGGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatcttttttttttttctc----tcaaaaaattcaatatcctatgaattctatcttctgtgtgttgaagtttca----tta-gtttctcttcctaaaaaattgg----------
|  | || |||||  | |||   ||||| ||| |||| | ||||||||||||| ||  ||| || |||||||| |||||||| || ||||| ||||||||||  || |      |   |  |      |||||   |   || ||  |  || | ||  ||   |    ||  |  |||    ||| ||| ||    || |  | ||            
TGTCTACTGATGATCTACTTAGAGCCATTGACTGTGGAACATCTGAAGGTGGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGGgtacgttttaaaactaactagcctaaagtcaaatcttcttatttcagagaaaatgtaaatttgatagaatgttgagtcagatgttatgttcctgacactgagcattttcatgattttag

upper sequence: GLYMA05G26250.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0044g01480.t01 (Vitis vinifera), 5'ss of exon 4
TAACAACAGATGACGTGCTTGTGGCCATCGACAGTGGTAAATCTGAAGGTGGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatcttttttttttttctctcaaaaaattcaatatcctatgaattctatcttctgtgtgt-tgaagtttcattagtttctcttcctaaaaaattgg
|| |    || || || |||   ||||| |||  ||||||||||||||| |||||   ||| |  ||||||||||||||||| || ||||| || ||||||||||  |  || |     | |    |    |    || || |||  ||  |  |||||    || ||||  |  ||   | | |  || | |     || 
TATCTGAGGAAGATGTTCTTACTGCCATTGACTCTGGTAAATCTGAAGGCGGTTCTAATGGCCAACACTGGGTTTTGGATCCTATTGATGGCACCAAAGGgtgagcttggttatagaaatgcaacaatttgacatgatttcttatttatcttg-cttctaccagtatgaaaatagatgtttatgttgtcgtgatggcatga

upper sequence: GLYMA05G26250.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S83_223V6.2 (Physcomitrella patens), 5'ss of exon 4
TAACAACAGATGACGTGCTTGTGGCCATCGACAGTGGTAAATCTGAAGGTGGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatcttttttttttttctctcaaaaaattc--aatatcctatga--attctatcttctgtgtgttgaagtttcattagtttctcttcctaaaaaattgg
| |  | ||| |||||  | |  ||||| ||| | ||||| || ||||| |||     |||||| |||||||||||||| || || |||||||||| |||||||| |    | ||    ||      |    ||   |   ||   | |  ||| || ||   ||||||     | | | |  ||| |  | | |     | | 
TGAGTAAAGAAGACGTATTGGAAGCCATTGACTGGGGTAATTCCGAAGGAGGTAGCAATGGACGCCACTGGGTTTTGGACCCCATCGATGGTACTAGAGGgtgagaaaacatcttgacctttcagagactcctttgtagcttctcttcattattttagctgaagtgtgtgtcgatattaatgatttatggttccatgttttag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398725|gb|EV268596.1|EV268596
EST:     GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGG                         GTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
genomic: GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatct ... gacattatagGTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
EST: gi|15813517|gb|BI785792.1|BI785792
EST:     GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGG                         GTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
genomic: GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatct ... gacattatagGTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
EST: gi|192294187|gb|FG986276.1|FG986276
EST:     GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGG                         GTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
genomic: GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatct ... gacattatagGTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
EST: gi|192330285|gb|FK020570.1|FK020570
EST:     GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGG                         GTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG
genomic: GGTTCAGTTGGACGGCACTGGGTTTTGGATCCGATAGATGGTACTAAAGGgtgagtatct ... gacattatagGTTTGTAAGAGGAGATCAATATGCTATAGCATTAGCTTTGTTACATGAAGG