Sequence
atgc intronic sequence ATGC exonic sequenceGGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g48270.1 (Oryza sativa), 5'ss of exon 9
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatga--atgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga
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GGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatccttttttctcaaaccatcttgtaatttctttgttcacgagtgctcctaaatactactccgtaattgcc-agttttgctattaggtaaactcccttg-
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 9
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga
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GGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctagtagttga---tttacattatcatata---agttgacaaatggattga---tctcacctctgtttgtgtctctgtccatcag---------
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G115766_T02 (Zea mays), 5'ss of exon 8
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaa-atataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaat-tttctagtcctctaaatgtcattttacttcattggcctgga
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GGATGGGTTGACTAAGACAGATGAGCTTGTTTTTGTTCTAGCAGCAACAAATTTACCATGGGAATTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGTgtatccttttctaaataatcttgtgtttcaaatcttagttgatttacaaatttcatgcatattgttagagatatgtatagacttgtatatctttgtactc--
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G34560.2 (Arabidopsis thaliana), 5'ss of exon 9
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtg-tgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga
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GGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatccttt---tacttactctcatagaacaaaaatgcttgtatcatgatt---ttcttttgtttaggcctcaactagtgaaaccattag-----------
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 5'ss of exon 9
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga----------
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GGATGGTTTGACAAAGACAGATGAGCTTGTTTTTGTTTTAGCAGCAACAAATCTCCCATGGGAATTGGATGCAGCGATGCTCCGTCGCCTTGAAAAGAGAgtatccttttgatggg-----tcaaatcatactttgttt--cagatgg-catttttaactttctg--tcagaaagttctagtttactatatatatgagagagagagagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259433|gb|BE347580.1|BE347580EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGT ATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttca ... aaattgaaagATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC