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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttctacaataaaaatttgatggggttctttctgttttctacctttatctttaaagatccttatctttttacttgtcatttgtag

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25780.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g02820.t01 (Vitis vinifera), 5'ss of exon 3
CAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcatt-ttctacaataaaaatttga---tggggttct--ttctgtttt--ctacc---tttatctttaaagatccttatctttttacttgtcatttgtag
|||| ||||||||||||||||| ||||| ||||||  ||| ||||||| ||||||||| ||||| ||| ||    ||||  ||||| |||| || ||| ||| | | ||  | ||||||| | | |   |||||||||  || || ||   |||      || |  |||     | || | |||||  || |  ||| |||
CAATCAAGGAAGATGATCGGGCTATTTTACTGGAAGGAGGTCTTACAAAATCAGCATCTGCAAAGTTCAATAGTTCATCCATCAAAGTGAACTTAATTAGgttactattggataataaaagtattacagtggggttctgattttggttatgctataaaactttttcttagcttgcttttttttttttttttttttttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193360313|gb|FK325111.1|FK325111
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
EST: gi|22524348|gb|BU083159.1|BU083159
EST:     TCAGCATCACCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
EST: gi|207784324|gb|GD758971.1|GD758971
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
EST: gi|193477710|gb|FK439149.1|FK439149
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
EST: gi|193310780|gb|FK277560.1|FK277560
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGG
EST: gi|207692007|gb|GD673924.1|GD673924
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCA
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCA
EST: gi|193686673|gb|FK626080.1|FK626080
EST:     TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCG                         GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG
genomic: TCAGCATCAGCAAAATTCCATCCACCATCTGTCAAATTGAATTTGATTCGgtcattttct ... tcatttgtagGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAG