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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTgtatccatgaagttcttggttttatattatgctagtttttacttgctaattgttatctttttttttttcgaaacatttatctcaaaattttttttttgat...

Basic information

species Glycine max
transcript GLYMA05G25550.1
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g00930.t01 (Vitis vinifera), 5'ss of exon 3
GGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTgtatccatgaagtt-cttggttttatattat----gctagttttta-cttgctaattgttatctttttttttttcgaaacatttatctcaaaattttttttttgat
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GGATATGAGCATGTGGTGGTCTTACGACATATCAAAGTTGTTGATGGTGATCTTGTTGAAGCTTTACAGCAGCTTCCACGAGGAACTGTTGCTGGTGATTgtatccaatagtttacatagattacttttgttaacacttgtctttaacaagagaattagaaaccactttttctatagtttattctacacaaaatattatt------